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Description: DEPRECATED (use opentox-compound), A Ruby on Rails webservice to display 2D structures of chemicals with optional highlighting of substructures
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REST API

Methods

POST http://webservices.in-silico.de/cdk-structure-visualizer/display

Renders the 2D structure of a SMILES string

Parameter: smiles

Response: png image of the 2D structure

POST http://webservices.in-silico.de/cdk-structure-visualizer/display_fragments

Renders the 2D structure of a SMILES string with activating fragments highlighted in red (weighted by p-values), inactivating fragments highlighted in green (weighted by p-values) and unknown fragments highlighted in yellow

Parameters

  • fragments
    • activating: Hash with Smarts patterns pointing to p-values
    • deactivating: Hash with Smarts patterns pointing to p-values
    • unknown: Array with Smarts patterns

Response: png image of the 2D structure with highlighted fragments

Example

Display benzene: POST http://webservices.in-silico.de/cdk-structure-visualizer/display smiles=c1ccccc1

Convenience methods

Although POST is preferred, GET is supported for CGI style requests (e.g. http://webservices.in-silico.de/cdk-structure-visualizer/display?smiles=c1ccccc1), Smiles strings have to be URL escaped to obtain correct results

HTTP Error Codes

405 Method not allowed Incorrect HTTP method

400 Bad request Error rendering Smiles

Last edited by helma, Tue Apr 14 08:15:54 -0700 2009
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